Genomics Data Analysis

Course Overview

Master genomics data analysis including variant calling, whole-genome and whole-exome sequencing analysis, SNP detection, InDels identification, and copy number variant analysis using state-of-the-art bioinformatics pipelines.

What You Will Learn

• NGS data quality control and preprocessing
• Read alignment with BWA and Bowtie2
• Variant calling with GATK and FreeBayes
• Variant annotation with ANNOVAR and VEP
• CNV detection and structural variant analysis
• Filtering and prioritizing clinically relevant variants

Prerequisites

Basic understanding of genetics and genomics. Some command-line experience recommended.

Duration

8 weeks, 3-4 hours per week

Level

Intermediate